Jenkins git checkout stage not able to checkout yml file - jenkins-pipeline

Question

I have created a jenkins pipeline for an application. I have following stages in my declarative pipeline.
Checkout
nuget restore
sonar scan start
dotnet build
sonar scan end
build docker image
run container
deploy on google Kubernetes cluster
If I don't include 8th step my pipeline works fine, but if I include 8th step my pipeline works only the first time. For the next runs I will get the below error in the first stage.
I have created a windows machine on Azure and running Jenkins on that machine.
Jenkins file
stages {
stage('Code Checkout') {
steps {
echo 'Cloning project...'
deleteDir()
checkout changelog: false, poll: false, scm: [$class: 'GitSCM', branches: [[name: '*/development']], extensions: [], userRemoteConfigs: [[url: 'https://github.com/shailu0287/JenkinsTest.git']]]
echo 'Project cloned...'
}
}
stage('Nuget Restore') {
steps {
echo "nuget restore"
bat 'dotnet restore \"WebApplication4.sln\"'
}
}
stage('Sonar Scan Start'){
steps{
withSonarQubeEnv('SonarQube_Home') {
echo "Sonar scan start"
echo "${scannerHome}"
bat "${scannerHome}\\SonarScanner.MSBuild.exe begin /k:\"Pan33r\" /d:sonar.login=\"squ_e2ecec8e21976c04764cc4940d3d3ddbec9e2898\""
}
}
}
stage('Build Solution') {
steps {
echo "Build Solution"
bat "\"${tool 'MSBUILD_Home'}\" WebApplication4.sln /p:Configuration=Release /p:Platform=\"Any CPU\" /p:ProductVersion=1.0.0.${env.BUILD_NUMBER}"
}
}
stage('Sonar Scan End'){
steps{
withSonarQubeEnv('SonarQube_Home') {
echo "${scannerHome}"
echo "sonar scan end"
bat "${scannerHome}\\SonarScanner.MSBuild.exe end /d:sonar.login=\"squ_e2ecec8e21976c04764cc4940d3d3ddbec9e2898\""
}
}
}
stage('Building docker image') {
steps{
script {
echo "Building docker image"
dockerImage = docker.build registry + ":$BUILD_NUMBER"
}
}
}
stage('Containers'){
parallel{
stage("Run PreContainer Checks"){
environment{
containerID = "${bat(script: 'docker ps -a -q -f name="c-Shailendra-master"', returnStdout: true).trim().readLines().drop(1).join("")}"
}
steps{
script{
echo "Run PreContainer Checks"
echo env.containerName
echo "containerID is "
echo env.containerID
if(env.containerID != null){
echo "Stop container and remove from stopped container list too"
bat "docker stop ${env.containerID} && docker rm ${env.containerID}"
}
}
}
}
stage("Publish Docker Image to DockerHub"){
steps{
script {
echo "Pushing docker image to docker hub"
docker.withRegistry( '', registryCredential ) {
dockerImage.push("$BUILD_NUMBER")
dockerImage.push('latest')
}
}
}
}
}
}
stage('Docker Deployment'){
steps{
echo "${registry}:${BUILD_NUMBER}"
echo "Docker Deployment by using docker hub's image"
bat "docker run -d -p 7200:80 --name c-${containerName}-master ${registry}:${BUILD_NUMBER}"
}
}
stage('Deploy to GKE') {
steps{
echo "Deployment started ..."
step([$class: 'KubernetesEngineBuilder', projectId: env.PROJECT_ID, clusterName: env.CLUSTER_NAME, location: env.LOCATION, manifestPattern: 'Kubernetes.yml', credentialsId: env.CREDENTIALS_ID, verify deployments: true])
}
}
}
}
If I remove the last step, all my builds work fine. If I include the last step, only the first build works fine then I have to restart the machine. I am not sure what is the issue with the YML file.