I can't fix this error when I install miniconda in Windows 11 with reticulate.
Here is the message :
reticulate::install_miniconda()
Installing Miniconda -- please wait a moment ...
Downloading "https://repo.anaconda.com/miniconda/Miniconda3-latest-Windows-x86_64.exe" ...
trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-latest-Windows-x86_64.exe'
Content type 'application/octet-stream' length 74687656 bytes (71.2 MB)
downloaded 71.2 MB
"C:/Users/charl/AppData/Local/r-miniconda/condabin/conda.bat" "create" "--yes" "--name" "r-reticulate" "python=3.8" "numpy" "--quiet" "-c" "conda-forge"
Error: Error creating conda environment 'r-reticulate' [exit code 1]
Thanks if you can help me
Related
I tried to install the package RcppParallel on a cluster but encountered the error below.
Content type 'application/x-gzip' length 1967672 bytes (1.9 MB)
==================================================
downloaded 1.9 MB
* installing *source* package ‘RcppParallel’ ...
** package ‘RcppParallel’ successfully unpacked and MD5 sums checked
Rscript execution error: No such file or directory
ERROR: configuration failed for package ‘RcppParallel’
* removing ‘/moto/home/yz4247/rpackages/RcppParallel’
The downloaded source packages are in
‘/tmp/RtmpvW3tlA/downloaded_packages’
Warning message:
In install.packages("RcppParallel") :
installation of package ‘RcppParallel’ had non-zero exit status
Because it is on a cluster, I installed the package in my personal library. The GCC version is 11.2.0.
How should I get rid of the error? Thanks!
On a Mac with Sierra OS and the latest versions of xcode command line tools and r/rstudio, when trying to install rcpp I get the following error. Is this a path problem? Any help would be greatly appreciated!
> install.packages("Rcpp", type = "source")
trying URL 'https://cran.rstudio.com/src/contrib/Rcpp_0.12.12.tar.gz'
Content type 'application/x-gzip' length 2421289 bytes (2.3 MB)
==================================================
downloaded 2.3 MB
* installing *source* package ‘Rcpp’ ...
** package ‘Rcpp’ successfully unpacked and MD5 sums checked
sh: mv: command not found
** libs
sh: make: command not found
ERROR: compilation failed for package ‘Rcpp’
* removing ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp’
sh: rm: command not found
Warning in install.packages :
installation of package ‘Rcpp’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/hn/zpnk2qsx19x1y974vym8wr7r0000gn/T/RtmptRz4Oe/downloaded_packages’
I am trying to install predictionet but having troubles. Clearly there are no windows binaries available so I have been trying to install by building from source.
I have Rtools installed from here.
So far I have tried to use this command:
> install.packages("C:/Users/Blah/predictionet_1.10.0.tar.gz", repos = NULL, type="source")
But I am receiving this error message:
Installing package into ‘C:/Users/Blah/Documents/R/win-library/3.1’
(as ‘lib’ is unspecified)
* installing *source* package 'predictionet' ...
** libs
*** arch - i386
Warning: running command 'make -f "C:/PROGRA~1/R/R-31~1.0/etc/i386/Makeconf" -f "C:/PROGRA~1/R/R-31~1.0/share/make/winshlib.mk" SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' SHLIB="predictionet.dll" OBJECTS="foo_mrmr.o mrnet_adapted.o mrnet_adapted2.o mrnet_ensemble_standalone.o"' had status 309
ERROR: compilation failed for package 'predictionet'
* removing 'C:/Users/Blah/Documents/R/win-library/3.1/predictionet'
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-31~1.0/bin/x64/R" CMD INSTALL -l "C:\Users\Blah\Documents\R\win-library\3.1" "C:/Users/Blah/Desktop/predictionet_1.10.0.tar.gz"' had status 1
Warning in install.packages :
installation of package ‘C:/Users/Blah/Desktop/predictionet_1.10.0.tar.gz’ had non-zero exit status
I am new to R so have no idea how to go about troubleshooting this, any help would be much obliged!
Note: I am using Rstudio
You may try :
source("http://bioconductor.org/biocLite.R")
biocLite("predictionet")
Thanks in advance.
I am trying to install XLConnect package. I am using RStudio. For your information rJava is installed.
Here is my command in R and the error message:
install.packages("XLConnect")
trying URL 'http://cran.rstudio.com/bin/windows/contrib/3.1/XLConnect_0.2-7.zip'
Content type 'application/zip' length 17997942 bytes (17.2 Mb)
opened URL
downloaded 16.7 Mb
Warning in install.packages : downloaded length 17473536 != reported length 17997942
Warning in install.packages : error 1 in extracting from zip file
Warning in install.packages : cannot open compressed file 'XLConnect/DESCRIPTION', probable reason 'No such file or directory'
Error in install.packages : cannot open the connection
The warnings indicate that something is corrupting the package download. Quite often the reason is a corporate firewall. You might want to check with your IT whether this is the case.
Try installing using standard R and the standard R will tell you where is package zip file is saved. Then you can install using RStudio by installing package from local zip file.
I faced similar issue while downloading some package. Try re-installing the package cran using
install.packages("CRAN")
See if it works, if the issue of unmatched length persists uninstall RStudio and install it again.
That seemed to have worked for me.
I am encountering problems loading the "Deducer" package due a loading problem with "rJava". The installation of "rJava" seems to be done correctly, yet it fails when calling it to load.
Please, can anyone shed some light of wisdom? :)
Error : .onLoad failed in loadNamespace() for 'rJava', details:
call: stop("No CurrentVersion entry in '", key, "'! Try re-installing Java and make sure R and Java have matching architectures.")
error: object 'key' not found
Error: package/namespace load failed for ‘rJava’
On xubuntu 12.04 with javac 1.7.0_21 set as default via:
$ sudo update-alternatives
then
$ sudo R CMD javareconf
$ sudo R
> update.packages()