Spring hibernate exception creating EntityManagerFactory - NegativeArraySizeException: -947658752 - spring-boot

Question

I have a spring boot application that serves map tiles from an SQLite database stored within the resources directory. This application runs perfectly fine within an IDE, and have never had an issue until I was attempting to run the compiled jar with the java -jar command. The database is being built into the JAR, but I don't understand how that could be an issue at all. When I run the compiled jar I get the following exception:
Exception encountered during context initialization - cancelling refresh attempt:
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'mapEntityManagerFactory' defined in class path resource
[com/app/application/configuration/MapDataSourceConfiguration.class]: Invocation of init method failed; nested exception is java.lang.NegativeArraySizeException: -947658752
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'mapEntityManagerFactory' defined in class path resource [com/app/application/configuration/MapDataSourceConfiguration.class]: Invocation of init method failed; nested exception is java.lang.NegativeArraySizeException: -947658752
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1804)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:620)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:542)
at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:335)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:333)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:208)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1154)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:908)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:583)
at org.springframework.boot.web.servlet.context.ServletWebServerApplicationContext.refresh(ServletWebServerApplicationContext.java:147)
at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:734)
at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:408)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:308)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:1306)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:1295)
at com.app.map.MapApplicationKt.main(MapApplication.kt:12)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.springframework.boot.loader.MainMethodRunner.run(MainMethodRunner.java:49)
at org.springframework.boot.loader.Launcher.launch(Launcher.java:108)
at org.springframework.boot.loader.Launcher.launch(Launcher.java:58)
at org.springframework.boot.loader.JarLauncher.main(JarLauncher.java:65)
Caused by: java.lang.NegativeArraySizeException: -947658752
at org.hibernate.boot.archive.internal.ArchiveHelper.getBytesFromInputStream(ArchiveHelper.java:181)
at org.hibernate.boot.archive.internal.ArchiveHelper.getBytesFromInputStreamSafely(ArchiveHelper.java:139)
at org.hibernate.boot.archive.spi.AbstractArchiveDescriptor.buildByteBasedInputStreamAccess(AbstractArchiveDescriptor.java:75)
at org.hibernate.boot.archive.internal.JarFileBasedArchiveDescriptor.visitArchive(JarFileBasedArchiveDescriptor.java:117)
at org.hibernate.boot.archive.scan.spi.AbstractScannerImpl.scan(AbstractScannerImpl.java:48)
at org.hibernate.boot.model.process.internal.ScanningCoordinator.coordinateScan(ScanningCoordinator.java:76)
at org.hibernate.boot.model.process.spi.MetadataBuildingProcess.prepare(MetadataBuildingProcess.java:107)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.<init>(EntityManagerFactoryBuilderImpl.java:269)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.<init>(EntityManagerFactoryBuilderImpl.java:182)
at org.springframework.orm.jpa.vendor.SpringHibernateJpaPersistenceProvider.createContainerEntityManagerFactory(SpringHibernateJpaPersistenceProvider.java:52)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:365)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:409)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:396)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.afterPropertiesSet(LocalContainerEntityManagerFactoryBean.java:341)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1863)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1800)
Application.yml:
spring:
jpa:
database-platform: org.hibernate.dialect.SQLiteDialect
datasource:
map:
url: jdbc:sqlite:backend/src/main/resources/db/mbtile/map.mbtiles
driver-class-name: org.sqlite.JDBC
configuration:
maximum-pool-size: 1
MapDataSourceConfiguration:
#Configuration
#EnableTransactionManagement
#EnableJpaRepositories(
basePackageClasses = [Tile::class],
basePackages = ["com.app.domain.repository.map"],
entityManagerFactoryRef = "mapEntityManagerFactory"
)
class MapDataSourceConfiguration {
#Bean
#ConfigurationProperties("spring.datasource.map")
fun mapDataSourceProperties(): DataSourceProperties = DataSourceProperties()
#Bean
#ConfigurationProperties("spring.datasource.map.configuration")
fun mapDataSource(properties: DataSourceProperties): HikariDataSource =
properties.initializeDataSourceBuilder().type(HikariDataSource::class.java).build()
#Bean
fun mapEntityManagerFactory(): LocalContainerEntityManagerFactoryBean = (LocalContainerEntityManagerFactoryBean()).apply {
dataSource = mapDataSource(mapDataSourceProperties())
setPackagesToScan("com.app.domain.model.map")
jpaVendorAdapter = HibernateJpaVendorAdapter()
}
}
Tile.kt:
#Entity
#IdClass(TileCompositeKey::class)
#Table(name = "tiles")
data class Tile(
#Id #Column(name = "zoom_level") val zoomLevel: Int = 0,
#Id #Column(name = "tile_column") val tileColumn: Int? = 0,
#Id #Column(name = "tile_row") val tileRow: Int? = 0,
#Column(name = "tile_data") val tileData: ByteArray? = null,
)
private class TileCompositeKey(
private val zoomLevel: Int? = 0,
private val tileColumn: Int? = 0,
private val tileRow: Int? = 0,
) : Serializable
Build.gradle.kts:
dependencies {
implementation("org.springframework.boot:spring-boot-starter-web")
implementation("com.fasterxml.jackson.module:jackson-module-kotlin")
implementation("org.jetbrains.kotlin:kotlin-reflect")
implementation("org.xerial:sqlite-jdbc:3.32.3.2")
implementation("com.github.gwenn:sqlite-dialect:0.1.0")
implementation("org.springframework.boot:spring-boot-starter-data-jpa")
implementation("org.jetbrains.kotlin:kotlin-stdlib-jdk8")
implementation("org.flywaydb:flyway-core")
implementation("com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:2.14.1")
implementation("com.fasterxml.jackson.core:jackson-databind:2.14.1")
}
Has anyone seen this issue before?