Agox installation - algorithm

I have problem with installation of AGOX, prerequisites are
A C compiler (Tested with Intel/2018.1.163)
An MPI installation (Tested with openmpi/4.0.3)
how to install these on Ubuntu, kindly help me with this. Thank you.
I have tried installing agox on ubuntu using the documentation given on github but got an error saying
ERROR: Could not find a version that satisfies the requirement agox (from versions: none)
ERROR: No matching distribution found for agox

Related

I get errors tring to install django cripsy forms

When I try to install django cripsy forms via the command:
'pip install django-cripsy-forms'
but I keep getting the following errors:
ERROR: Could not find a version that satisfies the requirement django-cripsy-forms (from versions: none) and
ERROR: No matching distribution found for django-cripsy-forms.
Please can anyone help me fix this?
Thanks.

ERROR: Could not find a version that satisfies the requirement unittest (from versions: none) ERROR: No matching distribution found for unittest

Recently I have been installed Python 3.8.2 ( Feb 24, 2020) (64bit, Windows). Afterward, I've been updated Pip 20.0.2. And then trying to install Unittest" pip install unittest" but unfortunately it's appearing this message.
Does anyone has been faced this same problem?
C:\Users\BiploB>pip install unittest --user
WARNING: pip is being invoked by an old script wrapper. This will fail in a future version of pip.
Please see https://github.com/pypa/pip/issues/5599 for advice on fixing the underlying issue.
To avoid this problem you can invoke Python with '-m pip' instead of running pip directly.
ERROR: Could not find a version that satisfies the requirement unittest (from versions: none)
ERROR: No matching distribution found for unittest
enter link description here
If I am not mistaken unittest is part of Python's standard library. Meaning, it's available per default, meaning there is no need (and also no way) to install separately.

Why pastebinit is not available via pip?

I got this error messsage.
$ pip install pastebinit
ERROR: Could not find a version that satisfies the requirement pastebinit (from versions: none)
ERROR: No matching distribution found for pastebinit
But according to the following URL. It should be available. Does anybody know what is wrong? Thanks.
https://libraries.io/pypi/pastebinit
There is no such project available on PyPI currently: https://pypi.org/project/pastebinit/
libraries.io is not an authoritative source. It also shows no currently available release for this project anyway: https://libraries.io/pypi/pastebinit/versions
The forge for this software seems to be here: https://launchpad.net/pastebinit
Nop, it's not there. The URL https://pypi.org/project/pastebinit/ returns error 404. Perhaps it was there but later was removed.

Error in Installing the Cairo R Package

I am attempting to install the Cairo package in the development version of R on Mac OS X 10.7.4, but I'm running into an issue that I cannot resolve.
I have installed Cairo with homebrew (i.e., brew install cairo) and received the following message:
==> Caveats This formula is keg-only, so it was not symlinked into /usr/local.
Mac OS X already provides this program and installing another version
in parallel can cause all kinds of trouble.
The Cairo provided by Leopard is too old for newer software to link
against.
Generally there are no consequences of this for you. If you build your
own software and it requires this formula, you'll need to add its lib
& include paths to your build variables:
LDFLAGS -L/usr/local/Cellar/cairo/1.12.2/lib
CPPFLAGS -I/usr/local/Cellar/cairo/1.12.2/include
With the above message in mind, I attempted to install the Cairo package from R-Forge with the following R command:
install.packages("Cairo", repos="http://www.rforge.net/", configure.args = c("CAIRO_LIBS=/usr/local/Cellar/cairo/1.12.2/lib", "CAIRO_CFLAGS=/usr/local/Cellar/cairo/1.12.2/include/cairo"))
I receive the following error:
checking cairo.h usability... no
checking cairo.h presence... no
checking for cairo.h... no
configure: error: Cannot find cairo.h!
Please install cairo (http://www.cairographics.org/) and/or set
CAIRO_CFLAGS/LIBS correspondingly. ERROR: configuration failed for package ‘Cairo’
I repeated the same command without the repos argument (by default, I use the FHCRC mirror) with the same result.
At this point, the problem seems obvious: the file cairo.h is not present. But then I listed the files in the include/cairo directory. Here's the response:
ls /usr/local/Cellar/cairo/1.12.2/include/cairo
cairo-deprecated.h cairo-ft.h
cairo-ps.h
cairo-script-interpreter.h
cairo-svg.h
cairo-xcb.h
cairo-xlib.h
cairo-features.h
cairo-pdf.h
cairo-quartz.h
cairo-script.h
cairo-version.h
cairo-xlib-xrender.h
cairo.h
So, I'm pointing the installation of the Cairo package to the appropriate place, but the error persists. I have tried variations, such as CAIRO_CFLAGS=/usr/local/Cellar/cairo/1.12.2/include, with no luck.
Thoughts? Any help you can provide is greatly appreciated.
In case it's necessary, here is my sessionInfo:
R Under development (unstable) (2012-08-08 r60208) Platform: x86_64-apple-darwin11.4.0 (64-bit)
locale: [1]
en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages: [1] stats graphics grDevices utils
datasets methods base
other attached packages: [1] BiocInstaller_1.5.12
loaded via a namespace (and not attached): [1] tools_2.16.0
I had similar issue with cairo config error, and I already installed cairo with homebrew. Try below
brew install pkg-config
This solved mine problem.
A coworker and I just fixed the problem by ignoring all of what I typed above. Rather, we installed Cairo and all of its dependencies from source manually, thereby bypassing the usage of brew or variants like port. This worked like a charm, so I am not entirely sure what was wrong above.
After trying everything listed here, I found this blog post about installing the "full R package" using brew: https://luispuerto.net/blog/2018/05/11/installing-r-with-homebrew-with-all-the-capabilities/
What finally worked for me was building R explicitly with cairo (brew's default R tap uses --without-cairo and simply editing the tap did not solve the issue for me).
Works like a charm for me with R 4.0.2, cairo 1.16.0_3 under macOS Catalina 10.15.6.

Agave dependency error

I am trying to install Agave under Fedora, but I got this error:
configure: error: gnome-doc-utils >= 0.3.2 not found
I tried to compile and install the gnome-doc-utils from this page, but i still got this error,and when i try the
yum list installed gnome-doc-utils*
command, I can't find the package. Do I have to register the package after installing? I don't think I have a error for the make install, because I don't see any the text error in the process, or I could be wrong.
In general, package managers (tools like yum) don't know that something has been installed on your machine unless it was installed as a package. If an agave package for Fedora exists, I would suggest using that instead of compiling from source.

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